Articles with public access mandates - Bas E. Dutilh - German Research FoundationLearn more
NoteFor this mandate, articles should be available from specific locations.
OverallNWOEuropean CommissionNIHNSFDOEDFGBBSRCMRCAcademy of FinlandBMBFUSDAWellcomeFWOZonMwGovernment of SpainARCNERCANRDHFKWFNKFIGBMFFNRSNSERCEMBLSFIEPSRCNCNFWFCIHRNSFCCancer Research UKKNAWSNSFGatesNOAANHMRCCCSCASHelmholtzDFFOTKAHRBFCTUK Research & InnovationGovernment of ArgentinaCZIKone FoundationSusan G. Komen
Available based on mandate: 21
Phylogeny and disease links of a widespread and ancient gut phage lineage
PA de Jonge, BJH van den Born, AH Zwinderman, M Nieuwdorp, ...
bioRxiv, 2023.08. 29.555303, 2023
Improving genome-scale metabolic models of incomplete genomes with deep learning
MD Boer, C Melkonian, H Zafeiropoulos, AF Haas, D Garza, BE Dutilh
bioRxiv, 2023.07. 10.548314, 2023
Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
EM Adriaenssens, S Roux, JR Brister, I Karsch-Mizrachi, JH Kuhn, ...
Nature biotechnology 41 (7), 898-902, 2023
Changes to virus taxonomy and the ICTV Statutes ratified by the International Committee on Taxonomy of Viruses (2023)
FM Zerbini, SG Siddell, EJ Lefkowitz, AR Mushegian, EM Adriaenssens, ...
Archives of virology 168 (7), 175, 2023
Virus taxonomy and the role of the International Committee on Taxonomy of Viruses (ICTV)
SG Siddell, DB Smith, E Adriaenssens, P Alfenas-Zerbini, BE Dutilh, ...
Journal of General Virology 104 (5), 001840, 2023
A social niche breadth score reveals niche range strategies of generalists and specialists
FAB von Meijenfeldt, P Hogeweg, BE Dutilh
Nature Ecology & Evolution 7 (5), 768-781, 2023
iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria
S Roux, AP Camargo, FH Coutinho, SM Dabdoub, BE Dutilh, S Nayfach, ...
PLoS biology 21 (4), e3002083, 2023
Four principles to establish a universal virus taxonomy
P Simmonds, EM Adriaenssens, FM Zerbini, NGA Abrescia, P Aiewsakun, ...
PLoS biology 21 (2), e3001922, 2023
Rational design of profile HMMs for sensitive and specific sequence detection with case studies applied to viruses, bacteriophages, and casposons
LS Oliveira, A Reyes, BE Dutilh, A Gruber
Viruses 15 (2), 519, 2023
Abolishment of morphology-based taxa and change to binomial species names: 2022 taxonomy update of the ICTV bacterial viruses subcommittee
D Turner, AN Shkoporov, C Lood, AD Millard, BE Dutilh, P Alfenas-Zerbini, ...
Archives of Virology 168 (2), 74, 2023
Eco-evolutionary dynamics of massive, parallel bacteriophage outbreaks in compost communities
J Meijer, P Skiadas, PB Rainey, P Hogeweg, BE Dutilh
bioRxiv, 2023.07. 31.550844, 2023
Guidance for creating individual and batch latinized binomial virus species names
TS Postler, L Rubino, EM Adriaenssens, BE Dutilh, B Harrach, S Junglen, ...
Journal of General Virology 103 (12), 001800, 2022
Recent changes to virus taxonomy ratified by the International Committee on Taxonomy of Viruses (2022)
PJ Walker, SG Siddell, EJ Lefkowitz, AR Mushegian, EM Adriaenssens, ...
Archives of virology 167 (11), 2429-2440, 2022
Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes
DR Garza, FAB von Meijenfeldt, B van Dijk, A Boleij, MA Huynen, ...
BMC ecology and evolution 22 (1), 101, 2022
A metagenomic portrait of the microbial community responsible for two decades of bioremediation of poly-contaminated groundwater
E Hauptfeld, J Pelkmans, TT Huisman, A Anocic, BL Snoek, ...
Water Research 221, 118767, 2022
Differentiating between viruses and virus species by writing their names correctly
FM Zerbini, SG Siddell, AR Mushegian, PJ Walker, EJ Lefkowitz, ...
Archives of virology 167 (4), 1231-1234, 2022
Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021
M Krupovic, D Turner, V Morozova, M Dyall-Smith, HM Oksanen, ...
Archives of Virology 166 (11), 3239-3244, 2021
Lifestyle of sponge symbiont phages by host prediction and correlative microscopy
MT Jahn, T Lachnit, SM Markert, C Stigloher, L Pita, M Ribes, BE Dutilh, ...
The ISME Journal 15 (7), 2001-2011, 2021
Eleven grand challenges in single-cell data science
D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ...
Genome biology 21, 1-35, 2020
A phage protein aids bacterial symbionts in eukaryote immune evasion
MT Jahn, K Arkhipova, SM Markert, C Stigloher, T Lachnit, L Pita, ...
Cell Host & Microbe 26 (4), 542-550. e5, 2019
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