Articles with public access mandates - Erik Aurell - Academy of FinlandLearn more
Available based on mandate: 23
Fast pseudolikelihood maximization for direct-coupling analysis of protein structure from many homologous amino-acid sequences
M Ekeberg, T Hartonen, E Aurell
Journal of Computational Physics 276, 341-356, 2014
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis
MJ Skwark, NJ Croucher, S Puranen, C Chewapreecha, M Pesonen, ...
PLoS genetics 13 (2), e1006508, 2017
Improving contact prediction along three dimensions
C Feinauer, MJ Skwark, A Pagnani, E Aurell
PLoS computational biology 10 (10), e1003847, 2014
Whole-genome mapping of 5′ RNA ends in bacteria by tagged sequencing: a comprehensive view in Enterococcus faecalis
N Innocenti, M Golumbeanu, AF d'Hérouël, C Lacoux, RA Bonnin, ...
Rna 21 (5), 1018-1030, 2015
Dynamic message-passing approach for kinetic spin models with reversible dynamics
G Del Ferraro, E Aurell
Physical Review E 92 (1), 010102, 2015
On the von Neumann entropy of a bath linearly coupled to a driven quantum system
E Aurell, R Eichhorn
New Journal of Physics 17 (6), 065007, 2015
Landscape of RNA polyadenylation in E. coli
A Maes, C Gracia, N Innocenti, K Zhang, E Aurell, E Hajnsdorf
Nucleic Acids Research 45 (5), 2746-2756, 2017
The maximum entropy fallacy redux?
E Aurell
PLoS computational biology 12 (5), e1004777, 2016
Unified picture of strong-coupling stochastic thermodynamics and time reversals
E Aurell
Physical Review E 97 (4), 042112, 2018
On work and heat in time-dependent strong coupling
E Aurell
Entropy 19 (11), 595, 2017
Time reversals of irreversible quantum maps
E Aurell, J Zakrzewski, K Życzkowski
Journal of Physics A: Mathematical and Theoretical 48 (38), 38FT01, 2015
Characteristic functions of quantum heat with baths at different temperatures
E Aurell
Physical Review E 97 (6), 062117, 2018
Cavity master equation for the continuous time dynamics of discrete-spin models
E Aurell, G Del Ferraro, E Domínguez, R Mulet
Physical Review E 95 (5), 052119, 2017
Correlation-compressed direct-coupling analysis
CY Gao, HJ Zhou, E Aurell
Physical Review E 98 (3), 032407, 2018
Causal analysis, correlation-response, and dynamic cavity
E Aurell, G Del Ferraro
Journal of Physics: Conference Series 699 (1), 012002, 2016
The stochastic thermodynamics of a rotating Brownian particle in a gradient flow
Y Lan, E Aurell
Scientific Reports 5 (1), 12266, 2015
Steady diffusion in a drift field: A comparison of large-deviation techniques and multiple-scale analysis
E Aurell, S Bo
Physical Review E 96 (3), 032140, 2017
Exploring the diluted ferromagnetic -spin model with a cavity master equation
E Aurell, E Domínguez, D Machado, R Mulet
Physical Review E 97 (5), 050103, 2018
Dynamic insights on transcription initiation and RNA processing during bacterial adaptation
C Lacoux, AF d'Hérouël, F Wessner-Le Bohec, N Innocenti, C Bohn, ...
RNA 26 (4), 382-395, 2020
Global Estimates of Errors in Quantum Computation by the Feynman–Vernon Formalism
E Aurell
Journal of Statistical Physics 171, 745-767, 2018
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