Authors
Erik Storrs, Abul Usmani, Prathamesh Chati, Bradley Krasnick, Ryan Fields, Li Ding, Koushik Das, Aadel Chaudhuri
Publication date
2022/11/1
Journal
Cancer Genetics
Volume
268
Pages
15
Publisher
Elsevier
Description
Pancreatic ductal adenocarcinoma (PDAC) is among the deadliest cancers worldwide. Bulk and single-cell technologies have recently been leveraged to better understand its genomic underpinnings. The PDAC tumor microenvironment (TME) has also been explored, revealing an immunosuppressive milieu. However, efforts to utilize TME features to facilitate more effective treatments have largely failed. Here, we performed single-cell RNA sequencing (scRNA-seq) on a cohort of treatment-naive PDAC biopsy samples (n=22) and surgical samples (n=6), integrated with 3 public datasets (n=49), resulting in ∼150,000 individual cells from 77 patients. Based on expression markers and differentiation status, we divided the resulting tumor cellular clusters into 5 molecular subtypes: Basal, Mixed Basal/Classical, Less differentiated Classical, More differentiated Classical, and ADEX. We then queried these 5 tumor cell …