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The widespread human commensal blindsnake species Indotyphlops braminus is currently the only known obligate parthenogenetic snake species. It is also known to be triploid. However, much of these data is from specimens collected outside India which is the native range of this species. Polyploidy and parthenogenesis are often associated with hybridization in amphibians and lizards. In this study, we generated nuclear and mitochondrial data from multiple Indotyphlops lineages from across peninsular India and investigated the possible hybrid origin of I. braminus. Species delimitation suggested three putative species, one of which was I. pammeces and the other two morphologically matched I. braminus. One of these was confined to the wet zone (high rainfall areas) while the other was largely distributed in the dry zone. There was wide discordance in the relationships between these lineages across markers …