Authors
Ying Zhu, Paul D Piehowski, Rui Zhao, Jing Chen, Yufeng Shen, Ronald J Moore, Anil K Shukla, Vladislav A Petyuk, Martha Campbell-Thompson, Clayton E Mathews, Richard D Smith, Wei-Jun Qian, Ryan T Kelly
Publication date
2018/2/28
Journal
Nature communications
Volume
9
Issue
1
Pages
882
Publisher
Nature Publishing Group UK
Description
Nanoscale or single-cell technologies are critical for biomedical applications. However, current mass spectrometry (MS)-based proteomic approaches require samples comprising a minimum of thousands of cells to provide in-depth profiling. Here, we report the development of a nanoPOTS (nanodroplet processing in one pot for trace samples) platform for small cell population proteomics analysis. NanoPOTS enhances the efficiency and recovery of sample processing by downscaling processing volumes to <200 nL to minimize surface losses. When combined with ultrasensitive liquid chromatography-MS, nanoPOTS allows identification of ~1500 to ~3000 proteins from ~10 to ~140 cells, respectively. By incorporating the Match Between Runs algorithm of MaxQuant, >3000 proteins are consistently identified from as few as 10 cells. Furthermore, we demonstrate quantification of ~2400 proteins from single human …
Total citations
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