Authors
Jeet Sukumaran, Mark T Holder
Publication date
2010/6/15
Journal
Bioinformatics
Volume
26
Issue
12
Pages
1569-1571
Publisher
Oxford University Press
Description
Summary: DendroPy is a cross-platform library for the Python programming language that provides for object-oriented reading, writing, simulation and manipulation of phylogenetic data, with an emphasis on phylogenetic tree operations. DendroPy uses a splits-hash mapping to perform rapid calculations of tree distances, similarities and shape under various metrics. It contains rich simulation routines to generate trees under a number of different phylogenetic and coalescent models. DendroPy's data simulation and manipulation facilities, in conjunction with its support of a broad range of phylogenetic data formats (NEXUS, Newick, PHYLIP, FASTA, NeXML, etc.), allow it to serve a useful role in various phyloinformatics and phylogeographic pipelines.
Availability: The stable release of the library is available for download and automated installation through the Python Package Index site (http …
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