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We hypothesise that the body shapes of three mudskipper species (Boleophthalmus dussumieri, Periophthalmus waltoni, and Scartelaos tenuis) are ecomorphological adaptations to different epi- and infaunal habitats. We investigated: (i) the association between burrow density and selected ecological variables; (ii) the phylogenetic relationships among these species, based on two mtDNA and one nDNA markers; (iii) their geometric morphometrics and ancestral shape reconstructions, based on two-dimensional landmark configurations; and (iv) their body surface-to-volume ratios (SAV), based on a geometric model. Boleophthalmus dussumieri and S. tenuis are more closely related, and more elongated than P. waltoni; the body of S. tenuis also has a higher SAV, and its elongated shape appears to be a divergent trait. P. waltoni is found in a wide range of conditions, including vegetated habitats; B …