Authors
Mahnaz Mohammadi, Jessica Cooper, Ognjen Arandelović, Christina Fell, David Morrison, Sheeba Syed, Prakash Konanahalli, Sarah Bell, Gareth Bryson, David J Harrison, David Harris-Birtill
Publication date
2022/11
Journal
Experimental Biology and Medicine
Volume
247
Issue
22
Pages
2025-2037
Publisher
SAGE Publications
Description
Fully supervised learning for whole slide image–based diagnostic tasks in histopathology is problematic due to the requirement for costly and time-consuming manual annotation by experts. Weakly supervised learning that utilizes only slide-level labels during training is becoming more widespread as it relieves this burden, but has not yet been applied to endometrial whole slide images, in iSyntax format. In this work, we apply a weakly supervised learning algorithm to a real-world dataset of this type for the first time, with over 85% validation accuracy and over 87% test accuracy. We then employ interpretability methods including attention heatmapping, feature visualization, and a novel end-to-end saliency-mapping approach to identify distinct morphologies learned by the model and build an understanding of its behavior. These interpretability methods, alongside consultation with expert pathologists, allow us to …
Total citations
202220232024125
Scholar articles
M Mohammadi, J Cooper, O Arandelović, C Fell… - Experimental Biology and Medicine, 2022