Authors
Peng Lian, Jue Li, Dongqi Wang, Dongqing Huang Wei
Publication date
2013/6/6
Journal
The Journal of Physical Chemistry B
Volume
117
Issue
26
Pages
7849–7856
Publisher
American Chemical Society
Description
The relevance of the pathway through which the second proton is delivered to the active site of P450cam and the subsequent coupling/uncoupling reactions has been investigated using Car–Parrinello molecular dynamics/molecular mechanics (CPMD/MM) dynamics simulations. Five models have been prepared, representing delivery pathways in the wild-type enzyme and its mutants in which Thr252 mutated into other residues with different side-chain length and hydrophobicity. In the simulations, coupling reaction is observed in the wild-type enzyme (Model A) and its T252S mutant (Model B), while the uncoupling products are obtained in the other three models (C, D, and E). Different from previous studies, a dynamic process of the last stage of coupling/uncoupling was observed. We found that the peroxide bond cleavage in coupling, the Fe–O bond stretching in uncoupling, proton transfer, and electron delivery …
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