Authors
Juan Antonio Garcia-Martin, Peter Clote, Ivan Dotu
Publication date
2013/4/30
Journal
Journal of bioinformatics and computational biology
Volume
11
Issue
02
Pages
1350001
Publisher
Imperial College Press
Description
Synthetic biology is a rapidly emerging discipline with long-term ramifications that range from single-molecule detection within cells to the creation of synthetic genomes and novel life forms. Truly phenomenal results have been obtained by pioneering groups — for instance, the combinatorial synthesis of genetic networks, genome synthesis using BioBricks, and hybridization chain reaction (HCR), in which stable DNA monomers assemble only upon exposure to a target DNA fragment, biomolecular self-assembly pathways, etc. Such work strongly suggests that nanotechnology and synthetic biology together seem poised to constitute the most transformative development of the 21st century. In this paper, we present a Constraint Programming (CP) approach to solve the RNA inverse folding problem. Given a target RNA secondary structure, we determine an RNA sequence which folds into the target structure; i.e …
Total citations
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Scholar articles
JA Garcia-Martin, P Clote, I Dotu - Journal of bioinformatics and computational biology, 2013