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Coral reef replenishment is threatened by global climate change and local water-quality degradation, including smothering of coral recruits by sediments generated by anthropogenic activities. Here we show that the ability of Acropora millepora recruits to remove sediments diminishes under future climate conditions, leading to increased mortality. Recruits raised under future climate scenarios for fourteen weeks (highest treatment: +1.2 °C, pCO₂: 950 ppm) showed twofold higher mortality following repeated sediment deposition (50% lethal sediment concentration LC₅₀: 14–24 mg cm⁻²) compared to recruits raised under current climate conditions (LC₅₀: 37–51 mg cm⁻²), depending on recruit age at the time of sedimentation. Older and larger recruits were more resistant to sedimentation and only ten-week-old recruits grown under current climate conditions survived sediment loads possible during dredging …