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Besides being one of the most popular ornamental bulbs in western horticulture, the Mediterranean genus Narcissus has been the subject of numerous studies focusing on a wide scope of topics, including cytogenetics, hybridization and the evolution of polymorphic sexual systems. Phylogenetic hypotheses based on chloroplast data have provided a backbone for the genus but a detailed phylogenetic framework is still lacking. To fill this gap, we present a phylogenetic study of the genus using five markers from three genomes: ndhF and matK (chloroplast DNA), cob and atpA (mitochondrial DNA), and ITS (nuclear ribosomal DNA). In addition, we use chromosome counts from 89 populations representing 69 taxa. All analyses confirm that Narcissus is monophyletic with two main lineages largely corresponding to subg. Hermione and subg. Narcissus, but with incongruences between organellar and nuclear …