Authors
Steven Weaver, Stephen D Shank, Stephanie J Spielman, Michael Li, Spencer V Muse, Sergei L Kosakovsky Pond
Publication date
2018/3/1
Journal
Molecular biology and evolution
Volume
35
Issue
3
Pages
773-777
Publisher
Oxford University Press
Description
Inference of how evolutionary forces have shaped extant genetic diversity is a cornerstone of modern comparative sequence analysis. Advances in sequence generation and increased statistical sophistication of relevant methods now allow researchers to extract ever more evolutionary signal from the data, albeit at an increased computational cost. Here, we announce the release of Datamonkey 2.0, a completely re-engineered version of the Datamonkey web-server for analyzing evolutionary signatures in sequence data. For this endeavor, we leveraged recent developments in open-source libraries that facilitate interactive, robust, and scalable web application development. Datamonkey 2.0 provides a carefully curated collection of methods for interrogating coding-sequence alignments for imprints of natural selection, packaged as a responsive (i.e. can be viewed on tablet and mobile devices), fully interactive …
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