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We used micro‐computed tomography and virtual tools to study metric and morphological features at the enamel–dentine junction and on the outer enamel surface in the postcanine dentition of an exceptionally well‐preserved maxilla and mandible of an early hominin. The fossil, Sts 52 from Sterkfontein, South Africa, is attributed to Australopithecus africanus and is about 2.5 million years old. For comparative purposes in this exploratory study, we also used micro‐computed tomography to analyse the dentition of a common chimpanzee (Pan troglodytes), a pygmy chimpanzee (Pan paniscus) and three extant humans. Metameric variation of the 3D enamel–dentine junction in the two chimpanzee mandibles was much smaller than in extant humans. Variation in metameric shape was high and complex. Notably, the mandibular metameric variation in extant humans can be greater within individuals, as compared …