Authors
Siddhartha Hamal Dhakal*, Kumari Kavita*, Shanker SS Panchapakesan, Adam Roth, Ronald R Breaker
Publication date
2023/10/3
Journal
Proceedings of the National Academy of Sciences
Volume
120
Issue
40
Pages
e2307854120
Publisher
National Academy of Sciences
Description
Riboswitches rely on structured aptamer domains to selectively sense their target ligands and regulate gene expression. However, some riboswitch aptamers in bacteria carry mutations in their otherwise strictly conserved binding pockets that change ligand specificities. The aptamer domain of a riboswitch class originally found to selectively sense guanine forms a three-stem junction that has since been observed to exploit numerous alterations in its ligand-binding pocket. These rare variants have modified their ligand specificities to sense other purines or purine derivatives, including adenine, 2′-deoxyguanosine (three classes), and xanthine. Herein, we report the characteristics of a rare variant that is narrowly distributed in the Paenibacillaceae family of bacteria. Known representatives are always associated with genes encoding 8-oxoguanine deaminase. As predicted from this gene association, these variant …
Scholar articles
S Hamal Dhakal, K Kavita, SSS Panchapakesan… - Proceedings of the National Academy of Sciences, 2023