Authors
Jessica L Nielson, Jesse Paquette, Aiwen W Liu, Cristian F Guandique, C Amy Tovar, Tomoo Inoue, Karen-Amanda Irvine, John C Gensel, Jennifer Kloke, Tanya C Petrossian, Pek Y Lum, Gunnar E Carlsson, Geoffrey T Manley, Wise Young, Michael S Beattie, Jacqueline C Bresnahan, Adam R Ferguson
Publication date
2015/10/14
Journal
Nature communications
Volume
6
Issue
1
Pages
8581
Publisher
Nature Publishing Group UK
Description
Data-driven discovery in complex neurological disorders has potential to extract meaningful syndromic knowledge from large, heterogeneous data sets to enhance potential for precision medicine. Here we describe the application of topological data analysis (TDA) for data-driven discovery in preclinical traumatic brain injury (TBI) and spinal cord injury (SCI) data sets mined from the Visualized Syndromic Information and Outcomes for Neurotrauma-SCI (VISION-SCI) repository. Through direct visualization of inter-related histopathological, functional and health outcomes, TDA detected novel patterns across the syndromic network, uncovering interactions between SCI and co-occurring TBI, as well as detrimental drug effects in unpublished multicentre preclinical drug trial data in SCI. TDA also revealed that perioperative hypertension predicted long-term recovery better than any tested drug after thoracic SCI in rats …
Total citations
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Scholar articles