Authors
Marcos E Buzanskas, Daniela A Grossi, Ricardo V Ventura, Flávio S Schenkel, Mehdi Sargolzaei, Sarah LC Meirelles, Fabiana B Mokry, Roberto H Higa, Maurício A Mudadu, Marcos VG Barbosa da Silva, Simone CM Niciura, Roberto AA Torres Júnior, Maurício M Alencar, Luciana CA Regitano, Danísio P Munari
Publication date
2014/4/14
Journal
PloS one
Volume
9
Issue
4
Pages
e94802
Publisher
Public Library of Science
Description
Studies are being conducted on the applicability of genomic data to improve the accuracy of the selection process in livestock, and genome-wide association studies (GWAS) provide valuable information to enhance the understanding on the genetics of complex traits. The aim of this study was to identify genomic regions and genes that play roles in birth weight (BW), weaning weight adjusted for 210 days of age (WW), and long-yearling weight adjusted for 420 days of age (LYW) in Canchim cattle. GWAS were performed by means of the Generalized Quasi-Likelihood Score (GQLS) method using genotypes from the BovineHD BeadChip and estimated breeding values for BW, WW, and LYW. Data consisted of 285 animals from the Canchim breed and 114 from the MA genetic group (derived from crossings between Charolais sires and ½ Canchim + ½ Zebu dams). After applying a false discovery rate correction at a 10% significance level, a total of 4, 12, and 10 SNPs were significantly associated with BW, WW, and LYW, respectively. These SNPs were surveyed to their corresponding genes or to surrounding genes within a distance of 250 kb. The genes DPP6 (dipeptidyl-peptidase 6) and CLEC3B (C-type lectin domain family 3 member B) were highlighted, considering its functions on the development of the brain and skeletal system, respectively. The GQLS method identified regions on chromosome associated with birth weight, weaning weight, and long-yearling weight in Canchim and MA animals. New candidate regions for body weight traits were detected and some of them have interesting biological functions, of which most have not been …
Total citations
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Scholar articles
ME Buzanskas, DA Grossi, RV Ventura, FS Schenkel… - PloS one, 2014