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An Index of Biotic Integrity (IBI) is proposed, based on the fish communities and populations in streams of the Hondo River basin, Mexico–Belize. Freshwater environments in this area are threatened by exotic fishes, eutrophication, and pesticide pollution, among other problems. This IBI should allow to identify the most vulnerable sites and eventually guide rehabilitation efforts. Data on composition, structure, and function of fish communities were evaluated. Twenty-three sites in the Mexican part of the basin were explored; a stratified sample of 13 sites was used to design the IBI, and the rest were used to test and refine the index. Thirty-four candidate indicator metrics were scanned for their correlation with an index of water and habitat quality (IWHQ), as well as for the possible influence of stream width and altitude or distance to the Hondo River mainstem. Twelve variables were selected to constitute the IBI: relative …