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Migratory fishes have high ecological, social, and commercial value, and are strongly affected by river regulation. This study aimed to understand how migratory fishes use the longitudinal gradient, in an upstream to downstream direction of two free-flowing rivers and two reservoirs in a cascade within the Upper Grande River Basin, Brazil. The numeric abundance, biomass, richness, presence of fingerlings and juveniles, and the macroscopic gonadal maturation stage of migratory fishes were ascertained and evaluated bimonthly for two years. Recruitment in migratory fishes seems to rely completely on the free-flowing rivers upstream and their floodplains. Transition areas do not seem to have a significant role in recruitment. Therefore, we highlight the importance of maintaining the free flow of rivers and the integrity of their floodplains.