Authors
Lee-Ping Wang, Keri A McKiernan, Joseph Gomes, Kyle A Beauchamp, Teresa Head-Gordon, Julia E Rice, William C Swope, Todd J Martínez, Vijay S Pande
Publication date
2017/4/27
Journal
The Journal of Physical Chemistry B
Volume
121
Issue
16
Pages
4023-4039
Publisher
American Chemical Society
Description
The increasing availability of high-quality experimental data and first-principles calculations creates opportunities for developing more accurate empirical force fields for simulation of proteins. We developed the AMBER-FB15 protein force field by building a high-quality quantum chemical data set consisting of comprehensive potential energy scans and employing the ForceBalance software package for parameter optimization. The optimized potential surface allows for more significant thermodynamic fluctuations away from local minima. In validation studies where simulation results are compared to experimental measurements, AMBER-FB15 in combination with the updated TIP3P-FB water model predicts equilibrium properties with equivalent accuracy, and temperature dependent properties with significantly improved accuracy, in comparison with published models. We also discuss the effect of changing the …
Total citations
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Scholar articles
LP Wang, KA McKiernan, J Gomes, KA Beauchamp… - The Journal of Physical Chemistry B, 2017