Authors
Paul O Lewis, Mark T Holder, Kent E Holsinger
Publication date
2005/4/1
Journal
Systematic biology
Volume
54
Issue
2
Pages
241-253
Publisher
Society of Systematic Zoology
Description
Bayesian phylogenetic analyses are now very popular in systematics and molecular evolution because they allow the use of much more realistic models than currently possible with maximum likelihood methods. There are, however, a growing number of examples in which large Bayesian posterior clade probabilities are associated with very short branch lengths and low values for non-Bayesian measures of support such as nonparametric bootstrapping. For the four-taxon case when the true tree is the star phylogeny, Bayesian analyses become increasingly unpredictable in their preference for one of the three possible resolved tree topologies as data set size increases. This leads to the prediction that hard (or near-hard) polytomies in nature will cause unpredictable behavior in Bayesian analyses, with arbitrary resolutions of the polytomy receiving very high posterior probabilities in some cases. We present a …
Total citations
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Scholar articles
PO Lewis, MT Holder, KE Holsinger - Systematic biology, 2005