Authors
Ingrid M Keseler, César Bonavides-Martínez, Julio Collado-Vides, Socorro Gama-Castro, Robert P Gunsalus, D Aaron Johnson, Markus Krummenacker, Laura M Nolan, Suzanne Paley, Ian T Paulsen, Martin Peralta-Gil, Alberto Santos-Zavaleta, Alexander Glennon Shearer, Peter D Karp
Publication date
2009/1/1
Journal
Nucleic acids research
Volume
37
Issue
suppl_1
Pages
D464-D470
Publisher
Oxford University Press
Description
EcoCyc (http://EcoCyc.org) provides a comprehensive encyclopedia of Escherichia coli biology. EcoCyc integrates information about the genome, genes and gene products; the metabolic network; and the regulatory network of E. coli. Recent EcoCyc developments include a new initiative to represent and curate all types of E. coli regulatory processes such as attenuation and regulation by small RNAs. EcoCyc has started to curate Gene Ontology (GO) terms for E. coli and has made a dataset of E. coli GO terms available through the GO Web site. The curation and visualization of electron transfer processes has been significantly improved. Other software and Web site enhancements include the addition of tracks to the EcoCyc genome browser, in particular a type of track designed for the display of ChIP-chip datasets, and the development of a comparative genome browser. A new Genome Omics Viewer …
Total citations
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Scholar articles
IM Keseler, C Bonavides-Martínez, J Collado-Vides… - Nucleic acids research, 2009