Authors
Heladia Salgado, Socorro Gama‐Castro, Agustino Martínez‐Antonio, Edgar Díaz‐Peredo, Fabiola Sánchez‐Solano, Martín Peralta‐Gil, Delfino Garcia‐Alonso, Verónica Jiménez‐Jacinto, Alberto Santos‐Zavaleta, César Bonavides‐Martínez, Julio Collado‐Vides
Publication date
2004/1/1
Journal
Nucleic Acids Research
Volume
32
Issue
suppl_1
Pages
D303-D306
Publisher
Oxford University Press
Description
RegulonDB is the primary database of the major international maintained curation of original literature with experimental knowledge about the elements and interactions of the network of transcriptional regulation in Escherichia coli K‐12. This includes mechanistic information about operon organization and their decomposition into transcription units (TUs), promoters and their σ type, binding sites of specific transcriptional regulators (TRs), their organization into ‘regulatory phrases’, active and inactive conformations of TRs, as well as terminators and ribosome binding sites. The database is complemented with clearly marked computational predictions of TUs, promoters and binding sites of TRs. The current version has been expanded to include information beyond specific mechanisms aimed at gathering different growth conditions and the associated induced and/or repressed genes. RegulonDB is now linked with …
Total citations
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