Authors
Tianyong Hao, Hongfang Liu, Chunhua Weng
Publication date
2016
Journal
Methods of information in medicine
Volume
55
Issue
03
Pages
266-275
Publisher
Schattauer GmbH
Description
Objectives: To develop an automated method for extracting and structuring numeric lab test comparison statements from text and evaluate the method using clinical trial eligibility criteria text.
Methods: Leveraging semantic knowledge from the Unified Medical Language System (UMLS) and domain knowledge acquired from the Internet, Valx takes seven steps to extract and normalize numeric lab test expressions: 1) text preprocessing, 2) numeric, unit, and comparison operator extraction, 3) variable identification using hybrid knowledge, 4) variable – numeric association, 5) context-based association filtering, 6) measurement unit normalization, and 7) heuristic rule-based comparison statements verification. Our reference standard was the consensus-based annotation among three raters for all comparison statements for two variables, i.e., HbA1c and glucose, identi -fied from all of Type 1 and Type 2 diabetes trials …
Total citations
201620172018201920202021202220232024278747482