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Stream temperatures are often used to predict salmonid embryo development; but there are very few medium‐term studies of the heat exchanges determining water column and bed temperatures. Furthermore, no research exists on the energy balance for sub‐arctic Scottish rivers. This paper reports results of a hydrometeorological study of a Cairngorm stream (Girnock burn, northeast Scotland) over the salmon spawning–hatch season (late October 2001 to mid‐April 2002) that aims: (1) to characterize seasonal and sub‐seasonal stream energy budget and thermal dynamics; and (2) to explain these variations with respect to meteorological and hydrological factors. In terms of average energy flux contributions, sensible heat (38.7%), the bed heat flux (37.0%) and friction at the stream bed and banks (24.3%) are heat sources, while latent heat (73.1%) and net radiation (26.9%) are heat sinks. All energy losses and …