Authors
Luca Ferretti, Benjamin Schmiegelt, Daniel Weinreich, Atsushi Yamauchi, Yutaka Kobayashi, Fumio Tajima, Guillaume Achaz
Publication date
2016/5/7
Journal
Journal of theoretical biology
Volume
396
Pages
132-143
Publisher
Academic Press
Description
Genotypic fitness landscapes are constructed by assessing the fitness of all possible combinations of a given number of mutations. In the last years, several experimental fitness landscapes have been completely resolved. As fitness landscapes are high-dimensional, simple measures of their structure are used as statistics in empirical applications. Epistasis is one of the most relevant features of fitness landscapes. Here we propose a new natural measure of the amount of epistasis based on the correlation of fitness effects of mutations. This measure has a natural interpretation, captures well the interaction between mutations and can be obtained analytically for most landscape models. We discuss how this measure is related to previous measures of epistasis (number of peaks, roughness/slope, fraction of sign epistasis, Fourier–Walsh spectrum) and how it can be easily extended to landscapes with missing data or …
Total citations
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Scholar articles
L Ferretti, B Schmiegelt, D Weinreich, A Yamauchi… - Journal of theoretical biology, 2016