Authors
Michael Schantz Klausen, Martin Closter Jespersen, Henrik Nielsen, Kamilla Kjaergaard Jensen, Vanessa Isabell Jurtz, Casper Kaae Soenderby, Morten Otto Alexander Sommer, Ole Winther, Morten Nielsen, Bent Petersen, Paolo Marcatili
Publication date
2019/6
Journal
Proteins: Structure, Function, and Bioinformatics
Volume
87
Issue
6
Pages
520-527
Publisher
John Wiley & Sons, Inc.
Description
The ability to predict local structural features of a protein from the primary sequence is of paramount importance for unraveling its function in absence of experimental structural information. Two main factors affect the utility of potential prediction tools: their accuracy must enable extraction of reliable structural information on the proteins of interest, and their runtime must be low to keep pace with sequencing data being generated at a constantly increasing speed. Here, we present NetSurfP‐2.0, a novel tool that can predict the most important local structural features with unprecedented accuracy and runtime. NetSurfP‐2.0 is sequence‐based and uses an architecture composed of convolutional and long short‐term memory neural networks trained on solved protein structures. Using a single integrated model, NetSurfP‐2.0 predicts solvent accessibility, secondary structure, structural disorder, and backbone dihedral …
Total citations
20182019202020212022202320244337914313110145
Scholar articles
MS Klausen, MC Jespersen, H Nielsen, KK Jensen… - Proteins: Structure, Function, and Bioinformatics, 2019