Authors
Mehanathan Muthamilarasan, Venkata Suresh Bonthala, Awdhesh Kumar Mishra, Rohit Khandelwal, Yusuf Khan, Riti Roy, Manoj Prasad
Publication date
2014/9
Journal
Functional & Integrative Genomics
Volume
14
Pages
531-543
Publisher
Springer Berlin Heidelberg
Description
C2H2 type of zinc finger transcription factors (TFs) play crucial roles in plant stress response and hormone signal transduction. Hence considering its importance, genome-wide investigation and characterization of C2H2 zinc finger proteins were performed in Arabidopsis, rice and poplar but no such study was conducted in foxtail millet which is a C4 Panicoid model crop well known for its abiotic stress tolerance. The present study identified 124 C2H2-type zinc finger TFs in foxtail millet (SiC2H2) and physically mapped them onto the genome. The gene duplication analysis revealed that SiC2H2s primarily expanded in the genome through tandem duplication. The phylogenetic tree classified these TFs into five groups (I–V). Further, miRNAs targeting SiC2H2 transcripts in foxtail millet were identified. Heat map demonstrated differential and tissue-specific expression patterns of these SiC2H2 genes …
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