Authors
Jerome Feret, Thomas Henzinger, Heinz Koeppl, Tatjana Petrov
Publication date
2012/5/4
Journal
Theoretical Computer Science
Volume
431
Pages
137-164
Publisher
Elsevier
Description
The induction of a signaling pathway is characterized by transient complex formation and mutual posttranslational modification of proteins. To faithfully capture this combinatorial process in a mathematical model is an important challenge in systems biology. Exploiting the limited context on which most binding and modification events are conditioned, attempts have been made to reduce the combinatorial complexity by quotienting the reachable set of molecular species into species aggregates while preserving the deterministic semantics of the thermodynamic limit. Recently, we proposed a quotienting that also preserves the stochastic semantics and that is complete in the sense that the semantics of individual species can be recovered from the aggregate semantics. In this paper, we prove that this quotienting yields a sufficient condition for weak lumpability (that is to say that the quotient system is still Markovian for a …
Total citations
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Scholar articles
J Feret, T Henzinger, H Koeppl, T Petrov - Theoretical Computer Science, 2012
J Feret, T Henzinger, H Koeppl, T Petrov - arXiv preprint arXiv:1011.0496, 2010