Authors
Kai Kammers, Michel Lang, Jan G Hengstler, Marcus Schmidt, Jörg Rahnenführer
Publication date
2011/12
Journal
BMC bioinformatics
Volume
12
Pages
1-12
Publisher
BioMed Central
Description
Background
An important application of high dimensional gene expression measurements is the risk prediction and the interpretation of the variables in the resulting survival models. A major problem in this context is the typically large number of genes compared to the number of observations (individuals). Feature selection procedures can generate predictive models with high prediction accuracy and at the same time low model complexity. However, interpretability of the resulting models is still limited due to little knowledge on many of the remaining selected genes. Thus, we summarize genes as gene groups defined by the hierarchically structured Gene Ontology (GO) and include these gene groups as covariates in the hazard regression models. Since expression profiles within GO groups are often heterogeneous, we present a new method to obtain subgroups with coherent patterns …
Total citations
20122013201420152016201720181266613
Scholar articles
K Kammers, M Lang, JG Hengstler, M Schmidt… - BMC bioinformatics, 2011