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Management of fisheries around the world is challenged by fishing impacts on habitats, bycatch species, threatened and endangered species, and even associated ecological communities. One response to these other factors has been a call for ecosystem-based fisheries management (EBFM), which demands consideration of the above non-target interactions. A challenge with implementation of EBFM is the scale and range of issues to be considered, all of which cannot be addressed at the same level of detail as for target species, due to data or time constraints. We developed an approach to progress the EBFM mandate in Australia, using a new ecological risk assessment framework applied to fisheries, termed Ecological Risk Assessment for the Effects of Fishing (ERAEF). Novel features of this framework include its hierarchical structure and its precautionary approach to uncertainty. The amount of information …