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While Carbon (C) sequestration on farmlands may contribute to mitigate CO₂ concentrations in the atmosphere, greater agro-biodiversity may ensure longer term stability of C storage in fluctuating environments. This study was conducted in the highlands of western Kenya, a region with high potential for agroforestry, with the objectives of assessing current biodiversity and aboveground C stocks in perennial vegetation growing on farmland, and estimating C sequestration potential in aboveground C pools. Allometric models were developed to estimate aboveground biomass of trees and hedgerows, and an inventory of perennial vegetation was conducted in 35 farms in Vihiga and Siaya districts. Values of the Shannon index (H), used to evaluate biodiversity, ranged from 0.01 in woodlots through 0.4–0.6 in food crop plots, to 1.3–1.6 in homegardens. Eucalyptus saligna was the most frequent tree species found as …