Authors
P Basset, DS Blanc
Publication date
2014/6
Journal
European journal of clinical microbiology & infectious diseases
Volume
33
Pages
927-932
Publisher
Springer Berlin Heidelberg
Description
Although the molecular typing of Pseudomonas aeruginosa is important to understand the local epidemiology of this opportunistic pathogen, it remains challenging. Our aim was to develop a simple typing method based on the sequencing of two highly variable loci. Single-strand sequencing of three highly variable loci (ms172, ms217, and oprD) was performed on a collection of 282 isolates recovered between 1994 and 2007 (from patients and the environment). As expected, the resolution of each locus alone [number of types (NT) = 35–64; index of discrimination (ID) = 0.816–0.964] was lower than the combination of two loci (NT = 78–97; ID = 0.966–0.971). As each pairwise combination of loci gave similar results, we selected the most robust combination with ms172 [reverse; R] and ms217 [R] to constitute the double-locus sequence typing (DLST) scheme for P. aeruginosa. This combination …
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