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The study reported in this paper developed and evaluated a web‐based concept map testing system for science students. Thirty‐eight Taiwanese high school students were involved and it was found that their performance on the system was not significantly related to their achievement as measured by traditional standard tests. Their views about the use of the system, in general, were positive. An analysis of students' future use of the system and their motivation and learning strategies revealed that those with more critical thinking metacognitive activities and an effort regulation management strategy showed more willingness to use the online testing system. Moreover, students with high test anxiety showed a preference to be tested through the system.