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The influence of submarine groundwater discharges (SGD) on the dynamics of coastal ecosystems is receiving increasing scientific attention, although our knowledge of this issue still remains insufficient. Understanding the ecological response of coastal ecosystems to SGD dynamics is important in order to evaluate and predict changes in coastal communities. The aim of the present study was to characterize the effect of groundwater discharge on subtidal soft‐bottom macrofaunal assemblages in the south coast of Portugal (Algarve) at different times of the year and under different discharge regimes. Sediment macrofauna was sampled twice per season in spring and summer 2011 in two locations: one under influence of SGD (Olhos de Água) and one not under that influence (Arrifes). The results showed that differences in community structure between locations occurred mainly during spring, when the magnitude …