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Message passing algorithms, whose iterative nature captures complicated interactions among interconnected variables in complex systems and extracts information from the fixed point of iterated messages, provide a powerful toolkit in tackling hard computational tasks in optimization, inference, and learning problems. In the context of constraint satisfaction problems (CSPs), when a control parameter (such as constraint density) is tuned, multiple threshold phenomena emerge, signaling fundamental structural transitions in their solution space. Finding solutions around these transition points is exceedingly challenging for algorithm design, where message passing algorithms suffer from a large message fluctuation far from convergence. Here we introduce a residual-based updating step into message passing algorithms, in which messages with large variation between consecutive steps are given high priority in the …