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A variety of bioacoustics distance metrics have been used to assess similarities in the vocalizations of different individuals. Here, we provide a detailed analysis of several acoustic similarity indices, some of which have been developed with the specific aim of characterizing the sensory coding of auditory stimuli. We compare different approaches through the analysis of begging calls of several passerine species and specialist brood parasitic cuckoos that putatively evolved to mimic their hosts. The different bioacoustics distances did not provide consistently correlated similarity patterns, implying that they are sensitive to different sound features. However, the encoded spectrogram alignment method was correlated with all other acoustic distance metrics, suggesting that this method provides a consistent approach to use when the perceptually salient sound parameters are unknown for a particular species. Our …