Authors
Isabelle Bonnet, Andreas Biebricher, Pierre-Louis Porte, Claude Loverdo, Olivier Benichou, Raphael Voituriez, Christophe Escude, Wolfgang Wende, Alfred Pingoud, Pierre Desbiolles
Publication date
2008/7/1
Journal
Nucleic acids research
Volume
36
Issue
12
Pages
4118-4127
Publisher
Oxford University Press
Description
The restriction endonuclease EcoRV can rapidly locate a short recognition site within long non-cognate DNA using ‘facilitated diffusion’. This process has long been attributed to a sliding mechanism, in which the enzyme first binds to the DNA via nonspecific interaction and then moves along the DNA by 1D diffusion. Recent studies, however, provided evidence that 3D translocations (hopping/jumping) also help EcoRV to locate its target site. Here we report the first direct observation of sliding and jumping of individual EcoRV molecules along nonspecific DNA. Using fluorescence microscopy, we could distinguish between a slow 1D diffusion of the enzyme and a fast translocation mechanism that was demonstrated to stem from 3D jumps. Salt effects on both sliding and jumping were investigated, and we developed numerical simulations to account for both the jump frequency and the jump length distribution …
Total citations
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Scholar articles
I Bonnet, A Biebricher, PL Porte, C Loverdo… - Nucleic acids research, 2008