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Desert wetlands, or ciénegas, are regions of high conservation value in the American Deserts. These environments, in the Apache Highlands Ecoregion spanning the borderlands of Arizona, USA and Sonora, México, contain an estimated 19% of endangered, threatened and candidate species within 2% of the regional area. Besides being crucial refugia for native fish, amphibians, snails, and plants, ciénegas constitute critical habitat for migratory birds. Here we analyze the distribution, conservation status and restoration potential of ciénegas in this region. Our results identified 97 ciénegas of which only 60 had information useful for our analysis. Of these, 46 ciénegas were considered functional, or extant, while the others were either dry or so altered that they no longer maintained their original ecological function. Using the ranking scheme of the National Gap Analysis Program we found that 80% of extant ciénegas …