Authors
Anneke Brümmer, Shivendra Kishore, Deni Subasic, Michael Hengartner, Mihaela Zavolan
Publication date
2013/10/1
Journal
Rna
Volume
19
Issue
10
Pages
1317-1326
Publisher
Cold Spring Harbor Lab
Description
To understand the function of the hundreds of RNA-binding proteins (RBPs) that are encoded in animal genomes it is important to identify their target RNAs. Although it is generally accepted that the binding specificity of an RBP is well described in terms of the nucleotide sequence of its binding sites, other factors such as the structural accessibility of binding sites or their clustering, to enable binding of RBP multimers, are also believed to play a role. Here we focus on GLD-1, a translational regulator of Caenorhabditis elegans, whose binding specificity and targets have been studied with a variety of methods such as CLIP (cross-linking and immunoprecipitation), RIP-Chip (microarray measurement of RNAs associated with an immunoprecipitated protein), profiling of polysome-associated mRNAs and biophysical determination of binding affinities of GLD-1 for short nucleotide sequences. We show that a simple …
Total citations
201420152016201720182019202020212022373233152