Authors
Gaddy T Bergmann, Scott T Bates, Kathryn G Eilers, Christian L Lauber, J Gregory Caporaso, William A Walters, Rob Knight, Noah Fierer
Publication date
2011/7/1
Journal
Soil Biology and Biochemistry
Volume
43
Issue
7
Pages
1450-1455
Publisher
Pergamon
Description
Verrucomicrobia are ubiquitous in soil, but members of this bacterial phylum are thought to be present at low frequency in soil, with few studies focusing specifically on verrucomicrobial abundance, diversity, and distribution. Here we used barcoded pyrosequencing to analyze verrucomicrobial communities in surface soils collected across a range of biomes in Antarctica, Europe, and the Americas (112 samples), as well as soils collected from pits dug in a montane coniferous forest (69 samples). Data collected from surface horizons indicate that Verrucomicrobia average 23% of bacterial sequences, making them far more abundant than had been estimated. We show that this underestimation is likely due to primer bias, as many of the commonly used PCR primers appear to exclude verrucomicrobial 16S rRNA genes during amplification. Verrucomicrobia were detected in 180 out of 181 soils examined, with members …
Total citations
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Scholar articles
GT Bergmann, ST Bates, KG Eilers, CL Lauber… - Soil Biology and Biochemistry, 2011