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In this paper we present a methodology for extracting decision trees from input data generated from trained neural networks instead of doing it directly from the data. A genetic algorithm is used to query the trained network and extract prototypes. A prototype selection mechanism is then used to select a subset of the prototypes. Finally, a standard induction method like ID3 or C5.0 is used to extract the decision tree. The extracted decision trees can be used to understand the working of the neural network besides performing classification. This method is able to extract different decision trees of high accuracy and comprehensibility from the trained neural network.