Authors
Steven Dajnowicz, Delaram Ghoreishi, Kalyan Modugula, Wolfgang Damm, Edward D Harder, Robert Abel, Lingle Wang, Haoyu S Yu
Publication date
2020/9/10
Journal
Journal of Chemical Theory and Computation
Volume
16
Issue
11
Pages
6926-6937
Publisher
American Chemical Society
Description
To address some of the inherent challenges in modeling metalloenzymes, we here report an extension to the functional form of the OPLS3e force field to include terms adopted from the ligand field molecular mechanics (LFMM) model, including the angular overlap and Morse potential terms. The integration of these terms with OPLS3e, herein referred to as OPLS3e+M, improves the description of metal–ligand interactions and provides accurate relative binding energies and geometric preferences of transition-metal complexes by training to gas-phase density functional theory (DFT) energies. For [Cu(H2O)4]2+, OPLS3e+M significantly improves H2O binding energies and the geometric preference of the tetra-aqua Cu2+ complex. In addition, we conduct free-energy perturbation calculations on two pharmaceutically relevant metalloenzyme targets, which include chemical modifications at varying proximity to the …
Total citations
202020212022202320242622
Scholar articles
S Dajnowicz, D Ghoreishi, K Modugula, W Damm… - Journal of Chemical Theory and Computation, 2020