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An intriguing structural transition from the quasi‐planar form of B₁₂ cluster upon the interaction with lithium atoms is reported. High‐level computations show that the lowest energy structures of LiB₁₂, Li₂B₁₂, and Li₃B₁₂ have quasi‐planar (C_s), tubular (D_6d), and cage‐like (C_s) geometries, respectively. The energetic cost of distorting the B₁₂ quasi‐planar fragment is overcompensated by an enhanced electrostatic interaction between the Li cations and the tubular or cage‐like B₁₂ fragments, which is the main reason of such drastic structural changes, resulting in the smallest tubular (Li₂B₁₂) and cage‐like (Li₃B₁₂) boron structures reported to date.