Authors
Angela S Hinrichs, Donna Karolchik, Robert Baertsch, Galt P Barber, Gill Bejerano, Hiram Clawson, Mark Diekhans, Terrence S Furey, Rachel A Harte, Fan Hsu, Jennifer Hillman-Jackson, Robert M Kuhn, Jakob Skou Pedersen, Andy Pohl, Brian J Raney, Kate R Rosenbloom, Adam Siepel, Kayla E Smith, Charles W Sugnet, Ali Sultan-Qurraie, Daryl J Thomas, Heather Trumbower, Ryan J Weber, Matthew Weirauch, Ann S Zweig, David Haussler, W James Kent
Publication date
2006/1/1
Journal
Nucleic acids research
Volume
34
Issue
suppl_1
Pages
D590-D598
Publisher
Oxford University Press
Description
The University of California Santa Cruz Genome Browser Database (GBD) contains sequence and annotation data for the genomes of about a dozen vertebrate species and several major model organisms. Genome annotations typically include assembly data, sequence composition, genes and gene predictions, mRNA and expressed sequence tag evidence, comparative genomics, regulation, expression and variation data. The database is optimized to support fast interactive performance with web tools that provide powerful visualization and querying capabilities for mining the data. The Genome Browser displays a wide variety of annotations at all scales from single nucleotide level up to a full chromosome. The Table Browser provides direct access to the database tables and sequence data, enabling complex queries on genome-wide datasets. The Proteome Browser graphically displays protein properties …
Total citations
Scholar articles
AS Hinrichs, D Karolchik, R Baertsch, GP Barber… - Nucleic acids research, 2006