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The interannual variability in the transport of anchovy eggs and larvae in the Sicily Channel, relatively to the period 1999–2012, is studied by means of numerical simulations of the Mediterranean Forecasting System (MFS) circulation model provided by INGV. Subgrid‐scale dynamics not resolved by the MFS model is parameterized in terms of kinematic fields. The latter affect small‐scale tracer relative dispersion, while leaving the mean large‐scale advection substantially unchanged. A Lagrangian Transport Index (LTI) can be defined to characterize the efficiency of the main currents, e.g., the Atlantic Ionian Stream, in connecting spawning and nursery areas to each other. In our case, this indicator comes from the first arrival time statistics of tracers traveling from a spawning area near Sciacca to a nursery area in proximity of Cape Passero. We observe, on the basis of LTI values, that there are years when the …