Authors
GA Huerta-Miranda, WI García-García, A Vidal-Limon, M Miranda-Hernández
Publication date
2023/2/11
Journal
Journal of Biomolecular Structure and Dynamics
Volume
41
Issue
3
Pages
1018-1027
Publisher
Taylor & Francis
Description
The negative impact of infectious diseases like COVID-19 on public health and the global economy is evident. This pandemic represents a significant challenge for the scientific community to develop new practical analytical methods for accurately diagnosing emerging cases. Due to their selectivity and sensitivity, new methodologies based on antigen/antibody interactions to detect COVID-19 biomarkers are necessary. In this context, the theoretical, computational modeling reduces experimental efforts and saves resources for rational biosensor design. This study proposes using molecular dynamics to predict the interactions between the Receptor Binding Domain (RBD) of the SARS-CoV-2 spike protein simplified model and a set of highly characterized antibodies. The binding free energy of the antigen/antibody complexes was calculated for the simplified models and compared against the complete SARS-CoV-2 …
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