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Ivo Hofacker
Ivo Hofacker
Verified email at tbi.univie.ac.at - Homepage
Title
Cited by
Cited by
Year
Partition function and base pairing probabilities of RNA heterodimers
SH Bernhart, H Tafer, U Mückstein, C Flamm, PF Stadler, IL Hofacker
Algorithms for Molecular Biology 1, 1-10, 2006
3462006
RNAz 2.0: improved noncoding RNA detection
AR Gruber, S Findeiß, S Washietl, IL Hofacker, PF Stadler
Biocomputing 2010, 69-79, 2010
3332010
Memory efficient folding algorithms for circular RNA secondary structures
IL Hofacker, PF Stadler
Bioinformatics 22 (10), 1172-1176, 2006
3332006
The impact of target site accessibility on the design of effective siRNAs
H Tafer, SL Ameres, G Obernosterer, CA Gebeshuber, R Schroeder, ...
Nature biotechnology 26 (5), 578-583, 2008
3212008
Alignment of RNA base pairing probability matrices
IL Hofacker, SHF Bernhart, PF Stadler
Bioinformatics 20 (14), 2222-2227, 2004
3182004
Oxygen and proton pathways in cytochrome c oxidase
I Hofacker, K Schulten
Proteins: Structure, Function, and Bioinformatics 30 (1), 100-107, 1998
3021998
Local RNA base pairing probabilities in large sequences
SH Bernhart, IL Hofacker, PF Stadler
Bioinformatics 22 (5), 614-615, 2006
2822006
Analysis of RNA sequence structure maps by exhaustive enumeration. I
W Grüner, R Giegerich, D Strothmann, C Reidys, J Weber, IL Hofacker, ...
Monatshefte für Chemie 127, 355-389, 1996
2671996
miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes
PWC Hsu, HD Huang, SD Hsu, LZ Lin, AP Tsou, CP Tseng, PF Stadler, ...
Nucleic acids research 34 (suppl_1), D135-D139, 2006
2602006
R na secondary structure analysis using the vienna rna package
IL Hofacker
Current protocols in bioinformatics 26 (1), 12.2. 1-12.2. 16, 2009
258*2009
Combinatorics of RNA secondary structures
IL Hofacker, P Schuster, PF Stadler
Discrete Applied Mathematics 88 (1-3), 207-237, 1998
2581998
Conserved RNA secondary structures in Flaviviridae genomes
C Thurner, C Witwer, IL Hofacker, PF Stadler
Journal of General Virology 85 (5), 1113-1124, 2004
2562004
Barrier trees of degenerate landscapes
C Flamm, IL Hofacker, PF Stadler, MT Wolfinger
Oldenbourg Wissenschaftsverlag GmbH 216 (2), 155, 2002
2432002
Structured RNAs in the ENCODE selected regions of the human genome
S Washietl, JS Pedersen, JO Korbel, C Stocsits, AR Gruber, ...
Genome research 17 (6), 852-864, 2007
2242007
RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data
S Washietl, S Findeiß, SA Müller, S Kalkhof, M Von Bergen, IL Hofacker, ...
Rna 17 (4), 578-594, 2011
2232011
Design of multistable RNA molecules
C Flamm, IL Hofacker, S Maurer-Stroh, PF Stadler, M Zehl
Rna 7 (2), 254-265, 2001
2202001
Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis
C Jöchl, M Rederstorff, J Hertel, PF Stadler, IL Hofacker, M Schrettl, ...
Nucleic acids research 36 (8), 2677-2689, 2008
2152008
Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomics
S Washietl, IL Hofacker
Journal of molecular biology 342 (1), 19-30, 2004
1992004
AREsite: a database for the comprehensive investigation of AU-rich elements
AR Gruber, J Fallmann, F Kratochvill, P Kovarik, IL Hofacker
Nucleic acids research 39 (suppl_1), D66-D69, 2010
1982010
Primary relaxation in a hard-sphere system
M Fuchs, I Hofacker, A Latz
Physical Review A 45 (2), 898, 1992
1911992
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Articles 21–40