Articles with public access mandates - Ivo HofackerLearn more
Available somewhere: 108
The impact of target site accessibility on the design of effective siRNAs
H Tafer, SL Ameres, G Obernosterer, CA Gebeshuber, R Schroeder, ...
Nature biotechnology 26 (5), 578-583, 2008
Mandates: Austrian Science Fund
Local RNA base pairing probabilities in large sequences
SH Bernhart, IL Hofacker, PF Stadler
Bioinformatics 22 (5), 614-615, 2006
Mandates: German Research Foundation
Structured RNAs in the ENCODE selected regions of the human genome
S Washietl, JS Pedersen, JO Korbel, C Stocsits, AR Gruber, ...
Genome research 17 (6), 852-864, 2007
Mandates: German Research Foundation
RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data
S Washietl, S Findeiß, SA Müller, S Kalkhof, M Von Bergen, IL Hofacker, ...
Rna 17 (4), 578-594, 2011
Mandates: German Research Foundation
Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis
C Jöchl, M Rederstorff, J Hertel, PF Stadler, IL Hofacker, M Schrettl, ...
Nucleic acids research 36 (8), 2677-2689, 2008
Mandates: Austrian Science Fund
RNA snp: efficient detection of local RNA secondary structure changes induced by SNP s
R Sabarinathan, H Tafer, SE Seemann, IL Hofacker, PF Stadler, ...
Human mutation 34 (4), 546-556, 2013
Mandates: Danish Council for Independent Research, Danish Council for Strategic Research
SnoReport: computational identification of snoRNAs with unknown targets
J Hertel, IL Hofacker, PF Stadler
Bioinformatics 24 (2), 158-164, 2008
Mandates: German Research Foundation
The RNAsnp web server: predicting SNP effects on local RNA secondary structure
R Sabarinathan, H Tafer, SE Seemann, IL Hofacker, PF Stadler, ...
Nucleic acids research 41 (W1), W475-W479, 2013
Mandates: Danish Council for Independent Research, Danish Council for Strategic Research
RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure prediction
S Washietl, IL Hofacker, PF Stadler, M Kellis
Nucleic acids research 40 (10), 4261-4272, 2012
Mandates: US National Institutes of Health, Austrian Science Fund, German Research …
Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
M Hackl, T Jakobi, J Blom, D Doppmeier, K Brinkrolf, R Szczepanowski, ...
Journal of biotechnology 153 (1-2), 62-75, 2011
Mandates: Austrian Science Fund
Predicting RNA secondary structures from sequence and probing data
R Lorenz, MT Wolfinger, A Tanzer, IL Hofacker
Methods 103, 86-98, 2016
Mandates: Austrian Science Fund
Tristetraprolin‐driven regulatory circuit controls quality and timing of mRNA decay in inflammation
F Kratochvill, C Machacek, C Vogl, F Ebner, V Sedlyarov, AR Gruber, ...
Molecular systems biology 7 (1), 560, 2011
Mandates: Austrian Science Fund, German Research Foundation
Variations on RNA folding and alignment: lessons from Benasque
AF Bompfünewerer, R Backofen, SH Bernhart, J Hertel, IL Hofacker, ...
Journal of mathematical biology 56, 129-144, 2008
Mandates: German Research Foundation
RNA folding with hard and soft constraints
R Lorenz, IL Hofacker, PF Stadler
Algorithms for Molecular Biology 11, 1-13, 2016
Mandates: Austrian Science Fund, German Research Foundation
SHAPE directed RNA folding
R Lorenz, D Luntzer, IL Hofacker, PF Stadler, MT Wolfinger
Bioinformatics 32 (1), 145-147, 2016
Mandates: Austrian Science Fund, German Research Foundation, Fraunhofer-Gesellschaft
Folding kinetics of large RNAs
M Geis, C Flamm, MT Wolfinger, A Tanzer, IL Hofacker, M Middendorf, ...
Journal of molecular biology 379 (1), 160-173, 2008
Mandates: Austrian Science Fund, German Research Foundation
RNAs everywhere: Genome‐wide annotation of structured RNAs
R Backofen, SH Bernhart, C Flamm, C Fried, G Fritzsch, J Hackermüller, ...
Journal of Experimental Zoology Part B: Molecular and Developmental …, 2007
Mandates: German Research Foundation
RIsearch2: suffix array-based large-scale prediction of RNA–RNA interactions and siRNA off-targets
F Alkan, A Wenzel, O Palasca, P Kerpedjiev, AF Rudebeck, PF Stadler, ...
Nucleic acids research 45 (8), e60-e60, 2017
Mandates: Austrian Science Fund, Danish Council for Independent Research, Innovation …
AREsite2: an enhanced database for the comprehensive investigation of AU/GU/U-rich elements
J Fallmann, V Sedlyarov, A Tanzer, P Kovarik, IL Hofacker
Nucleic acids research 44 (D1), D90-D95, 2016
Mandates: Austrian Science Fund
Predicting RNA 3D structure using a coarse-grain helix-centered model
P Kerpedjiev, CH Zu Siederdissen, IL Hofacker
Rna 21 (6), 1110-1121, 2015
Mandates: Austrian Science Fund
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