Ivo Hofacker

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Peter F StadlerProfessor of Bioinformatics, Univ. LeipzigVerified email at bioinf.uni-leipzig.de
Christoph FlammAssociate Professor, Department of Theoretical Chemistry, University of ViennaVerified email at univie.ac.at
Stephan BernhartBioinformatik, Universitaet LeipzigVerified email at bioinf.uni-leipzig.de
Ronny LorenzVerified email at tbi.univie.ac.at
Peter SchusterProfessor der Chemie, Universität WienVerified email at tbi.univie.ac.at
Christian Höner zu SiederdissenUniversität JenaVerified email at uni-jena.de
Jana Schor (née Hertel)Dr. rer. nat.Verified email at ufz.de
Stefan WashietlComputer Science and Artificial Intelligence Lab, MITVerified email at mit.edu
Andrea TanzerMedical University of ViennaVerified email at univie.ac.at
Michael T. WolfingerPrincipal Investigator at University of Vienna / RNAForecast CEOVerified email at univie.ac.at
Andreas R. GruberPaperpile LLCVerified email at paperpile.com
Sebastian WillProfessor of Bioinformatics, LIX, Ecole PolytechniqueVerified email at polytechnique.edu
Walter FontanaProfessor of Systems Biology, Harvard Medical SchoolVerified email at hms.harvard.edu
Rolf BackofenProfessor für Bioinformatik, Universität FreiburgVerified email at informatik.uni-freiburg.de
Manfred TackerUniversity of Applied Sciences, Vienna and Circular Analytics TK GmbHVerified email at fh-campuswien.ac.at
Fabian AmmanCeMMVerified email at meduniwien.ac.at
Thomas GingerasProfessor of Functional Genomics, Cold Spring Harbor LaboratoryVerified email at cshl.edu
Kristin Reiche (nee Missal)Head of Bioinformatics Research Unit, Fraunhofer Institute for Cell Therapy and Immunology, LeipzigVerified email at izi.fraunhofer.de
Reidys ChristianUniversity of VirginiaVerified email at virginia.edu
Philipp Kapranov, PhDXiamen UniversityVerified email at xmu.edu.cn

Ivo Hofacker

University of Vienna

Verified email at tbi.univie.ac.at - Homepage

Bioinformatics RNA structure


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Prediction of locally stable RNA secondary structures for genome-wide surveys IL Hofacker, B Priwitzer, PF Stadler Bioinformatics 20 (2), 186-190, 2004	186	2004
Automatic detection of conserved RNA structure elements in complete RNA virus genomes IL Hofacker, M Fekete, C Flamm, MA Huynen, S Rauscher, PE Stolorz, ... Nucleic acids research 26 (16), 3825-3836, 1998	186	1998
Comments on the alpha-peak shapes for relaxation in supercooled liquids M Fuchs, W Gotze, I Hofacker, A Latz Journal of Physics: Condensed Matter 3 (26), 5047, 1991	174	1991
RNA snp: efficient detection of local RNA secondary structure changes induced by SNP s R Sabarinathan, H Tafer, SE Seemann, IL Hofacker, PF Stadler, ... Human mutation 34 (4), 546-556, 2013	168	2013
`SnoReport`: computational identification of snoRNAs with unknown targets J Hertel, IL Hofacker, PF Stadler Bioinformatics 24 (2), 158-164, 2008	165	2008
RNApredator: fast accessibility-based prediction of sRNA targets F Eggenhofer, H Tafer, PF Stadler, IL Hofacker Nucleic acids research 39 (suppl_2), W149-W154, 2011	163	2011
Neutral networks in protein space: a computational study based on knowledge-based potentials of mean force A Babajide, IL Hofacker, MJ Sippl, PF Stadler Folding and Design 2 (5), 261-269, 1997	162	1997
Conserved RNA secondary structures in Picornaviridae genomes C Witwer, S Rauscher, IL Hofacker, PF Stadler Nucleic acids research 29 (24), 5079-5089, 2001	144	2001
The RNAsnp web server: predicting SNP effects on local RNA secondary structure R Sabarinathan, H Tafer, SE Seemann, IL Hofacker, PF Stadler, ... Nucleic acids research 41 (W1), W475-W479, 2013	143	2013
Efficient computation of RNA folding dynamics MT Wolfinger, WA Svrcek-Seiler, C Flamm, IL Hofacker, PF Stadler Journal of Physics A: Mathematical and General 37 (17), 4731, 2004	135	2004
RNA folding with soft constraints: reconciliation of probing data and thermodynamic secondary structure prediction S Washietl, IL Hofacker, PF Stadler, M Kellis Nucleic acids research 40 (10), 4261-4272, 2012	132	2012
Algorithm independent properties of RNA secondary structure predictions M Tacker, PF Stadler, EG Bornberg-Bauer, IL Hofacker, P Schuster European Biophysics Journal 25, 115-130, 1996	131	1996
Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering M Hackl, T Jakobi, J Blom, D Doppmeier, K Brinkrolf, R Szczepanowski, ... Journal of biotechnology 153 (1-2), 62-75, 2011	129	2011
Predicting RNA secondary structures from sequence and probing data R Lorenz, MT Wolfinger, A Tanzer, IL Hofacker Methods 103, 86-98, 2016	122	2016
Tristetraprolin‐driven regulatory circuit controls quality and timing of mRNA decay in inflammation F Kratochvill, C Machacek, C Vogl, F Ebner, V Sedlyarov, AR Gruber, ... Molecular systems biology 7 (1), 560, 2011	118	2011
Variations on RNA folding and alignment: lessons from Benasque AF Bompfünewerer, R Backofen, SH Bernhart, J Hertel, IL Hofacker, ... Journal of mathematical biology 56, 129-144, 2008	118	2008
The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures AR Gruber, R Neuböck, IL Hofacker, S Washietl Nucleic acids research 35 (suppl_2), W335-W338, 2007	116	2007
RNA folding with hard and soft constraints R Lorenz, IL Hofacker, PF Stadler Algorithms for Molecular Biology 11, 1-13, 2016	111	2016
SHAPE directed RNA folding R Lorenz, D Luntzer, IL Hofacker, PF Stadler, MT Wolfinger Bioinformatics 32 (1), 145-147, 2016	111	2016
Folding kinetics of large RNAs M Geis, C Flamm, MT Wolfinger, A Tanzer, IL Hofacker, M Middendorf, ... Journal of molecular biology 379 (1), 160-173, 2008	108	2008

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